POP-OUT | CLOSE
HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
3AJ6
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Toxin
    Structure Weight: 67712.81
    Molecule: Main hemagglutinin component
    Polymer: 1 Type: protein Length: 286
    Chains: A, B
    Mutation: F179I
    Organism Clostridium botulinum
    Gene Names HA-33 antP-33 ha1
    UniProtKB:   Protein Feature View | Search PDB | P46084  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Clostridium botulinum   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3AH1  The wild-type protein complexed with sialic acid, bound at sites I and III 
    3AH2  The wild-type protein complexed with N-acetylgalactosamine, bound at site I 
    3AH4  The wild-type protein complexed with galactose, bound at sites I and II 
    3AJ5  The wild-type protein complexed with N-acetylgalactosamine, bound at site II 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    NGA
    Search 
    Download      		NGA C8 H15 N O6
    N-ACETYL-D-GALACTOSAMINE
    		NGA:3AJ6
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    NGA
    Search 
    Download      		NGA
    N/Ain BindingDB
    Kd: 51.5 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
Reset Layout
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Nakamura, T.,  Tonozuka, T.,  Sato, R.,  Oguma, K.,  Nishikawa, A.

    Deposition:   2010-05-24
    Release:   2011-06-01
    Last Modified (REVDAT):   2011-07-27
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-27
    Citation
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.48
    R-Value: 0.168 (obs.)
    R-Free: 0.192
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 137.86 α = 90.00 
    b = 62.14 β = 104.47 
    c = 82.34 γ = 90.00