3A9J

Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin

Structural Biology Knowledgebase: 3A9J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3A9J

Classification: SIGNALING PROTEIN / METAL BINDING PROTEIN

Total Structure Weight: 21224.79

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A 76 Mus musculus Mutation: K63R
Gene Name(s): Ubc
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin B 77 Mus musculus Gene Name(s): Ubc
Mitogen-activated protein kinase kinase kinase 7-interacting protein 2 C 34 Mus musculus Fragment: RanBP2-type, residues 665-693
Gene Name(s): Tab2 Kiaa0733 Map3k7ip2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 30.08 α = 90.00
b = 71.48 β = 90.00
c = 72.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-29
  • Released Date: 2009-12-08
  • Deposition author(s): Sato, Y., Yoshikawa, A., Yamashita, M., Yamagata, A., Fukai, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4