3A46

Crystal structure of MvNei1/THF complex

Structural Biology Knowledgebase: 3A46 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 3A46

Classification: HYDROLASE

Total Structure Weight: 83189.96


Macromolecule Entities
Molecule Chains Length Organism Details
Formamidopyrimidine-DNA glycosylase A, B 289 Acanthamoeba polyphaga mimivirus EC#: 3.2.2.23 IUBMB
Gene Name(s): MIMI_L315
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA C, E 13 synthetic
DNA D, F 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
D, F DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.213
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.51 α = 90.00
b = 121.46 β = 95.50
c = 80.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-01
  • Released Date: 2009-07-21
  • Deposition author(s): Imamura, K., Wallace, S., Doublie, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update