Download MendeleyStructure-Affinity Relationship Study of Bleomycins and Shble protein Using a Chemical Array
Miyazaki, I., Okumura, H., Simizu, S., Takahashi, Y., Kanoh, N., Nonomura, Y., Osada, H.To be published.
2ZHP
Crystal structure of bleomycin-binding protein from Streptoalloteichus hindustanus complexed with bleomycin derivative
- PDB DOI: https://doi.org/10.2210/pdb2ZHP/pdb
- Classification: ANTIBIOTIC INHIBITOR
- Organism(s): Streptoalloteichus hindustanus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-02-06 Released: 2009-02-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.216
- R-Value Work: 0.187
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bleomycin resistance protein | 124 | Streptoalloteichus hindustanus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P17493 (Streptoalloteichus hindustanus) Explore P17493 Go to UniProtKB: P17493 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17493 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BY6 Query on BY6 | C [auth A], F [auth B] | [(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)-2-[(1R,2S)-2-[[6-amino-2-[(1S)-3-amino-1-[(2,3-diamino-3-oxopropyl)amino]-3-oxopropyl]-5-methylpyrimidine-4-carbonyl]amino]-3-[[(2S,3R,4R)-5-[[(2R,3S)-1-[2-[4-[4-[3-[4-(3-aminopropylamino)butylamino]propylcarbamoyl]-1,3-thiazol-2-yl]-1,3-thiazol-2-yl]ethylamino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-hydroxy-4-methyl-5-oxopentan-2-yl]amino]-1-(3H-imidazol-4-yl)-3-oxopropoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl] carbamate C60 H96 N20 O21 S2 FOUFFVYWFNBHHH-YNGSZULRSA-N |  | ||
| CU Query on CU | D [auth A], G [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A], H [auth B], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.216
- R-Value Work: 0.187
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.992 | α = 90 |
| b = 53.868 | β = 90 |
| c = 125.498 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| BSS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2009-02-17 Deposition Author(s): Okumura, H., Miyazaki, I., Simizu, S., Osada, H.
Revision History (Full details and data files)
- Version 1.0: 2009-02-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
