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STRUCTURE OF NEK2 BOUND TO AMINIPYRAZINE COMPOUND 5
2XKE
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 33132.88
    Molecule: SERINE/THREONINE-PROTEIN KINASE NEK2
    Polymer: 1 Type: protein Length: 279
    Chains: A
    EC#: 2.7.11.1   
    Fragment: CATALYTIC DOMAIN, RESIDUES 1-271
    Organism Homo sapiens
    Gene Names NEK2 NEK2A NLK1
    UniProtKB:   Protein Feature View | Search PDB | P51955  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
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    Identifier Details
    2JAV  HUMAN KINASE WITH PYRROLE-INDOLINONE LIGAND 
    2W5A  HUMAN NEK2 KINASE ADP-BOUND 
    2W5B  HUMAN NEK2 KINASE ATPGAMMAS-BOUND 
    2W5H  HUMAN NEK2 KINASE APO 
    2WQO  STRUCTURE OF NEK2 BOUND TO THE AMINOPYRIDINE CCT241950 
    2XK3  STRUCTURE OF NEK2 BOUND TO CCT244744 
    2XK4  STRUCTURE OF NEK2 BOUND TO CCT242101 
    2XK6  STRUCTURE OF NEK2 BOUND TO 
    2XK7  STRUCTURE OF NEK2 BOUND TO CCT242010 
    2XK8  STRUCTURE OF NEK2 BOUND TO CCT241799 
    2XKC  STRUCTURE OF NEK2 BOUND TO CCT241734 
    2XKD  STRUCTURE OF NEK2 BOUND TO CCT231393 
    2XKF  STRUCTURE OF NEK2 BOUND TO CCT134934 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    CL
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    CL Cl
    CHLORIDE ION
    WI2
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    WI2 C17 H20 N4 O3
    1-[3-amino-6-(3-methoxyphenyl)pyrazin-2-yl]piperidine- 4-carboxylic acid
    WI2:2XKE
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    WI2
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    WI2
    IC50: 4200 nM (100) - data from BindingDB  
    IC50: 4200 nM - data from BindingMOAD  
    IC50: 4200 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Mas-Droux, C.,  Bayliss, R.

    Deposition:   2010-07-07
    Release:   2010-11-03
    Last Modified (REVDAT):   2011-05-25
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.20
    R-Value: 0.178 (obs.)
    R-Free: 0.226
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 101.13 α = 90.00 
    b = 56.88 β = 133.36 
    c = 79.83 γ = 90.00