2XGY

COMPLEX OF RABBIT ENDOGENOUS LENTIVIRUS (RELIK)CAPSID WITH CYCLOPHILIN A

Structural Biology Knowledgebase: 2XGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.156

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XGY

Classification: VIRAL PROTEIN / ISOMERASE

Total Structure Weight: 35517.66

Macromolecule Entities
Molecule Chains Length Organism Details
RELIK CAPSID N-TERMINAL DOMAIN A 149 Oryctolagus cuniculus
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A B 173 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIA Gene View CYPA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.156
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.16 α = 90.00
b = 117.16 β = 90.00
c = 49.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-06-08
  • Released Date: 2010-09-22
  • Deposition author(s): Goldstone, D.C., Robertson, L.E., Haire, L.F., Stoye, J.P., Taylor, I.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4