2XFQ

rasagiline-inhibited human monoamine oxidase B in complex with 2-(2- benzofuranyl)-2-imidazoline

Structural Biology Knowledgebase: 2XFQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XFQ

Classification: OXIDOREDUCTASE

Total Structure Weight: 120299.26

Macromolecule Entities
Molecule Chains Length Organism Details
AMINE OXIDASE [FLAVIN-CONTAINING] B A, B 520 Homo sapiens EC#: 1.4.3.4 IUBMB
Gene Name(s): MAOB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Oxidases

Protein Name: Monoamine Oxidase B


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
C15
Query on C15

A N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE
C17 H38 N O3 S
IZWSFJTYBVKZNK-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XCG
Query on XCG

A, B 2-(2-BENZOFURANYL)-2-IMIDAZOLINE
C11 H8 N2 O
VBFQIUOSXHUWCT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RAS
Query on RAS

A, B (1R)-N-(prop-2-en-1-yl)-2,3-dihydro-1H-inden- 1-amine
RASAGILINE, BOUND FORM (Synonym)
C12 H15 N
RPAZWTZFMPXUKS-GFCCVEGCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed:
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.51 α = 90.00
b = 223.38 β = 90.00
c = 86.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-26
  • Released Date: 2010-10-06
  • Deposition author(s): Bonivento, D., Milczek, E.M., Mcdonald, G.R., Binda, C., Holt, A., Edmondson, D.E., Mattevi, A.

Revision History

  • 2012-02-29
    Type: Non-polymer description | Details: FORMUL,HETNAM,HETSYN
  • 2012-02-29
    Type: Version format compliance | Details: REMARK 4