POP-OUT | CLOSE
 
DIPEPTIDE INHIBITORS OF THERMOLYSIN
2WI0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 35027.82
    Molecule: THERMOLYSIN
    Polymer: 1 Type: protein Length: 316
    Chains: A
    EC#: 3.4.24.27   
    Details: THE DI-PEPTIDE LW IS BOUND TO THE PROTEIN
    Organism: Bacillus thermoproteolyticus
    Gene Name: npr
    UniProtKB: Protein Feature View | Search PDB | P00800  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bacillus thermoproteolyticus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1FJ3  THERMOLYSIN (50% ACETONE SOAKED) 
    1FJO  THERMOLYSIN (60% ACETONE SOAKED CRYSTALS) 
    1FJQ  THERMOLYSIN (70% ACETONE SOAKED CRYSTALS) 
    1FJT  THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS) 
    1FJU  THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS) 
    1FJV  THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) 
    1FJW  THERMOLYSIN (50 MM PHENOL SOAKED) 
    1GXW  THE 2.2 A RESOLUTION STRUCTURE OF THERMOLYSIN CRYSTALLIZED IN PRESENCE OF POTASSIUM THIOCYANATE 
    1HYT  THERMOLYSIN COMPLEXED WITH BENZYLSUCCINIC ACID (2(S)-BENZYL-3-CARBOXYPROPIONIC ACID) 
    1KEI  THERMOLYSIN (SUBSTRATE-FREE) 
    1KJO  THERMOLYSIN COMPLEXED WITH Z-L-THREONINE (BENZYLOXYCARBONYL-L-THREONINE) 
    1KJP  THERMOLYSIN COMPLEXED WITH Z-L-GLUTAMIC ACID (BENZYLOXYCARBONYL-L-GLUTAMIC ACID) 
    1KKK  THERMOLYSIN COMPLEXED WITH Z-L-ASPARTIC ACID (BENZYLOXYCARBONYL-L-ASPARTIC ACID) 
    1KL6  THERMOLYSIN COMPLEXED WITH Z-L-ALANINE (BENZYLOXYCARBONYL-L-ALANINE) 
    1KR6  THERMOLYSIN COMPLEXED WITH Z-D-GLUTAMIC ACID (BENZYLOXYCARBONYL-D-GLUTAMIC ACID) 
    1KRO  THERMOLYSIN COMPLEXED WITH Z-D-THREONINE (BENZYLOXYCARBONYL-D-THREONINE) 
    1KS7  THERMOLYSIN COMPLEXED WITH Z-D-ASPARTIC ACID (BENZYLOXYCARBONYL-D-ASPARTIC ACID) 
    1KTO  THERMOLYSIN COMPLEXED WITH Z-D-ALANINE (BENZYLOXYCARBONYL-D-ALANINE) 
    1L3F  THERMOLYSIN IN THE ABSENCE OF SUBSTRATE HAS AN OPEN CONFORMATION 
    1LNA  THERMOLYSIN COMPLEXED WITH COBALT 
    1LNB  THERMOLYSIN COMPLEXED WITH IRON 
    1LNC  THERMOLYSIN COMPLEXED WITH MANGANESE 
    1LND  THERMOLYSIN COMPLEXED WITH ZINC 
    1LNE  THERMOLYSIN COMPLEXED WITH CADMIUM 
    1LNF  THERMOLYSIN 
    1OS0  THERMOLYSIN WITH AN ALPHA-AMINO PHOSPHINIC INHIBITOR 
    1PE5  THERMOLYSIN WITH TRICYCLIC INHIBITOR 
    1PE7  THERMOLYSIN WITH BICYCLIC INHIBITOR 
    1PE8  THERMOLYSIN WITH MONOCYCLIC INHIBITOR 
    1QF0  THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-PHE-TYR. PARAMETERS FOR ZN- BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1QF1  THERMOLYSIN COMPLEXED WITH (2- SULPHANYLHEPTANOYL)-PHE-ALA. PARAMETERS FOR ZN -BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1QF2  THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-GLY-(5-PHENYLPROLINE). PARAMETERS FOR ZN- MONODENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1THL  THERMOLYSIN COMPLEXED WITH A NOVEL GLUTARAMIDE DERIVATIVE, N-(1-(2(R,S)-CARBOXY-4- PHENYLBUTYL) CYCLOPENTYLCARBONYL)-(S)-TRYPTOPHAN 
    1TLI  THERMOLYSIN (2% ISOPROPANOL SOAKED CRYSTALS) 
    1TLP  THERMOLYSIN COMPLEX WITH PHOSPHORAMIDON 
    1TLX  THERMOLYSIN (NATIVE) 
    1TMN  THERMOLYSIN COMPLEX WITH N-(1-CARBOXY-3- PHENYLPROPYL)-L-LEUCYL-L-TRYPTOPHAN 
    1TRL  THERMOLYSIN FRAGMENT 255 - 316 (NMR, 8 STRUCTURES) 
    1Y3G  CRYSTAL STRUCTURE OF A SILANEDIOL PROTEASE INHIBITOR BOUNDTO THERMOLYSIN 
    1Z9G  CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITHTHE INHIBITOR (R)-RETRO-THIORPHAN 
    1ZDP  CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITHTHE INHIBITOR (S)-THIORPHAN 
    2A7G  ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULARCRYSTALLOGRAPHY, PART III- THE OPTIMAL DATA COLLECTIONWAVELENGTH 
    2TLI  THERMOLYSIN (5% ISOPROPANOL SOAKED CRYSTALS) 
    2TLX  THERMOLYSIN (NATIVE) 
    2TMN  THERMOLYSIN COMPLEX WITH N-PHOSPHORYL-L- LEUCINAMIDE (P-LEU-NH2) 
    2WHZ  DIPEPTIDE INHIBITORS OF THERMOLYSIN 
    3TLI  THERMOLYSIN (10% ISOPROPANOL SOAKED CRYSTALS) 
    3TMN  THERMOLYSIN COMPLEX WITH VAL-TRP (VW) 
    4TLI  THERMOLYSIN (25% ISOPROPANOL SOAKED CRYSTALS) 
    4TLN  THERMOLYSIN COMPLEX WITH L-LEUCYL-HYDROXYLAMINE 
    4TMN  THERMOLYSIN COMPLEX WITH CBZ-PHE==P==-LEU- ALA (ZFPLA) 
    5TLI  THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) 
    5TLN  THERMOLYSIN COMPLEX WITH HONH-BENZYLMALONYL-L -ALANYLGLYCINE-P-NITROANILIDE 
    5TMN  THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-LEU- LEU (ZG==P==LL) 
    6TLI  THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) 
    6TMN  THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-(O)- LEU-LEU (ZG==P==(O)LL) 
    7TLI  THERMOLYSIN (90% ISOPROPANOL SOAKED CRYSTALS) 
    7TLN  THERMOLYSIN COMPLEX WITH CH2CO(N-OH)LEU-OCH3 
    8TLI  THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS) 
    8TLN  THERMOLYSIN COMPLEXED WITH VAL-LYS DIPEPTIDE 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Lund, B.A.,  Leiros, I.,  Leiros, H.-K.S.

    Deposition:   2009-05-07
    Release:   2010-05-12
    Last Modified (REVDAT):   2011-05-11
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.95
    R-Value: 0.170 (obs.)
    R-Free: 0.219
    Space Group: P 61 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 92.71 α = 90.00 
    b = 92.71 β = 90.00 
    c = 127.60 γ = 120.00