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CRYSTAL STRUCTURE OF GRL-8234 BOUND TO BACE (BETA-SECRETASE)
2VKM
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 175888.04
    Molecule: BETA-SECRETASE 1
    Polymer: 1 Type: protein Length: 389
    Chains: A, B, C, D
    EC#: 3.4.23.46   
    Fragment: BETA-SECRETASE CATALYTIC DOMAIN, RESIDUES 58-446
    Details: BETA SECRETASE INHIBITOR
    Organism Homo sapiens
    Gene Names BACE1 BACE KIAA1149
    UniProtKB:   Protein Feature View | Search PDB | P56817  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1FKN  STRUCTURE OF BETA-SECRETASE COMPLEXED WITH INHIBITOR 
    1M4H  CRYSTAL STRUCTURE OF BETA-SECRETASE COMPLEXED WITHINHIBITOR OM00-3 
    1PY1  COMPLEX OF GGA1-VHS DOMAIN AND BETA- SECRETASE C-TERMINALPHOSPHOPEPTIDE 
    1SGZ  CRYSTAL STRUCTURE OF UNBOUND BETA-SECRETASE CATALYTICDOMAIN. 
    1TQF  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-124,671 
    1UJJ  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINAL PEPTIDEFROM BACE 
    1UJK  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINALPHOSPHOPEPTIDE FROM BACE 
    1W50  APO STRUCTURE OF BACE (BETA SECRETASE) 
    1W51  BACE (BETA SECRETASE) IN COMPLEX WITH A NANOMOLAR NON-PEPTIDIC INHIBITOR 
    1XN2  NEW SUBSTRATE BINDING POCKETS FOR BETA- SECRETASE. 
    1XN3  CRYSTAL STRUCTURE OF BETA-SECRETASE BOUND TO A LONGINHIBITOR WITH ADDITIONAL UPSTREAM RESIDUES. 
    1XS7  CRYSTAL STRUCTURE OF A CYCLOAMIDE-URETHANE- DERIVED NOVELINHIBITOR BOUND TO HUMAN BRAIN MEMAPSIN 2 (BETA-SECRETASE). 
    1YM2  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AUR200 
    1YM4  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AMK640 
    2B8L  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-000384950 
    2B8V  CRYSTAL STRUCTURE OF HUMAN BETA-SECRETASE COMPLEXED WITH L-L000430,469 
    2VA5  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 8C 
    2VA6  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 24 
    2VA7  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 27 
    2VIE  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-1-BENZYL-2-HYDROXY-3-((1,1,5- TRIMETHYLHEXYL)AMINO)PROPYL)-3-(ETHYLAMINO)-5 -(2-OXOPYRROLIDIN-1-YL)BENZAMIDE 
    2VIJ  HUMAN BACE-1 IN COMPLEX WITH 3-(1,1- DIOXIDOTETRAHYDRO-2H-1,2-THIAZIN-2-YL)-5 -(ETHYLAMINO)-N-((1S,2R)-2-HYDROXY-1-( PHENYLMETHYL)-3-(1,2,3,4-TETRAHYDRO-1- NAPHTHALENYLAMINO)PROPYL)BENZAMIDE 
    2VIY  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2- OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL) PROPYL)-3-(PENTYLSULFONYL)BENZAMIDE 
    2VIZ  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2- OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL) PROPYL)-3-(2-OXO-1-PYRROLIDINYL)-5-( PROPYLOXY)BENZAMIDE 
    2VJ6  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2- OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL) PROPYL)-3-(ETHYLAMINO)-5-(2-OXO-1- PYRROLIDINYL)BENZAMIDE 
    2VJ7  HUMAN BACE-1 IN COMPLEX WITH 3-(ETHYLAMINO )-N-((1S,2R)-2-HYDROXY-1-(PHENYLMETHYL)-3 -(((3-(TRIFLUOROMETHYL)PHENYL)METHYL)AMINO) PROPYL)-5-(2-OXO-1-PYRROLIDINYL)BENZAMIDE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    BSD
    Search 
    Download      		BSD C36 H42 N4 O6 S
    N-{(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxybenzyl)amino]propyl}- 5-[methyl(methylsulfonyl)amino]-N'-[(1R)- 1-phenylethyl]benzene-1,3-dicarboxamide
    		BSD:2VKM
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    BSD
    Search 
    Download      		BSD
    IC50: 1 nM (100) - data from BindingDB  
    Ki: 1.8 nM (100) - data from BindingDB  
    Ki: 1.8 nM - data from BindingMOAD  
    Ki: 1.8 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 generated by PQS (software)
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