Crystal structure of Rubisco from Chlamydomonas reinhardtii with a large-subunit V331A mutation
2V63
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 557524.11
    Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Polymer: 1 Type: protein Length: 475
    Chains: A, B, C, D, E, F, G, H
    EC#: 4.1.1.39   
    Mutation: YES
    Organism: Chlamydomonas reinhardtii
    Gene Name: rbcL
    UniProtKB: Search PDB | P00877   Protein Feature View
    Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
    Polymer: 2 Type: protein Length: 140
    Chains: I, J, K, L, M, N, O, P
    EC#: 4.1.1.39   
    Organism: Chlamydomonas reinhardtii
    Gene Name: RBCS-1
    UniProtKB: Search PDB | P00873   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Chlamydomonas reinhardtii   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Chlamydomonas reinhardtii   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1GK8   RUBISCO FROM CHLAMYDOMONAS REINHARDTII 
    1IR2   CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5 -BISPHOSPHATECARBOXYLASE/OXYGENASE (RUBISCO) FROM GREEN ALGA,CHLAMYDOMONAS REINHARDTII COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE ( 2-CABP) 
    1UW9   L290F-A222T CHLAMYDOMONAS RUBISCO MUTANT 
    1UZD   CHLAMYDOMONAS,SPINACH CHIMERIC RUBISCO 
    1UZH   A CHIMERIC CHLAMYDOMONAS, SPINACH RUBISCO ENZYME 
    2V67   CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT SUPRESSOR MUTATION T342I 
    2V68   CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, T342I 
    2V69   CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT MUTATION D473E 
    2V6A   CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, G344S 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CAP
    Search 
    Download 
    CAP C6 H14 O13 P2
    2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
    EDO
    Search 
    Download 
    EDO C2 H6 O2
    1,2-ETHANEDIOL
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    HYP
    Search 
    HYP C5 H9 N O3 PRO lPeptideLinking
    KCX
    Search 
    KCX C7 H14 N2 O4 LYS lPeptideLinking
    SMC
    Search 
    SMC C4 H9 N O2 S CYS lPeptideLinking
    MME
    Search 
    MME C6 H13 N O2 S MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Karkehabadi, S.,  Satagopagan, S.,  Taylor, T.C.,  Spreitzer, R.J.,  Andersson, I.

    Deposition:   2007-07-13
    Release:   2007-07-31
    Last Modified (REVDAT):   2015-02-04
     
  •   Revision History    Hide
    Mouse over text for details
    2015-02-04
    Citation
    2015-02-04
    Other
    2015-02-04
    Biological assembly
    2015-02-04
    Geometry validation
    2015-02-04
    Function and keywords
    2015-02-04
    Secondary structure
    2015-02-04
    Sequence database correspondence
    2015-02-04
    Atom nomenclature
    2015-02-04
    Linkage
    2015-02-04
    Version format compliance
    2015-02-04
    Polymer description
    2015-02-04
    Entry authorship
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.193 (obs.)
    R-Free: 0.214
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 121.38 α = 90.00 
    b = 177.45 β = 117.65 
    c = 122.57 γ = 90.00