2RLB

Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 6.5 bound to M6P in absence of Mn


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 2RLB

Classification: Protein transport sugar binding protein

Total Structure Weight: 35849.85

Macromolecule Entities
Molecule Chains Length Organism Details
Cation-dependent mannose-6-phosphate receptor A, B 154 Bos taurus Mutation: N31Q, N57Q, N68Q, N87Q
Gene Name(s): M6PR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M6D
Query on M6D

A, B 6-O-phosphono-beta-D-mannopyranose
beta-D-mannose-6-phosphate (Synonym)
C6 H13 O9 P
NBSCHQHZLSJFNQ-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 91.39 α = 90.00
b = 91.39 β = 90.00
c = 84.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-18
  • Released Date: 2008-02-12
  • Deposition author(s): Olson, L.J., Hindsgaul, O., Dahms, N.M., Kim, J.-J.P.

Revision History

  • Version 1_0: 2008-02-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description