2RL8

Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 6.5 bound to M6P


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 2RL8

Classification: Protein transport sugar binding protein

Total Structure Weight: 35959.72

Macromolecule Entities
Molecule Chains Length Organism Details
Cation-dependent mannose-6-phosphate receptor A, B 154 Bos taurus Mutation: N31Q, N57Q, N68Q, N87Q
Gene Name(s): M6PR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M6D
Query on M6D

A, B 6-O-phosphono-beta-D-mannopyranose
beta-D-mannose-6-phosphate (Synonym)
C6 H13 O9 P
NBSCHQHZLSJFNQ-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.219
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 91.66 α = 90.00
b = 91.66 β = 90.00
c = 85.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-18
  • Released Date: 2008-02-12
  • Deposition author(s): Olson, L.J., Hindsgaul, O., Kim, J.-J.P., Dahms, N.M.

Revision History

  • Version 1_0: 2008-02-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description