2Q4X

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g16990


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.136

Literature

Macromolecules
Sequence Display for 2Q4X

Classification: PLANT PROTEIN

Total Structure Weight: 51328.00

Macromolecule Entities
Molecule Chains Length Organism Details
Seed maturation protein PM36 homolog A, B 221 Arabidopsis thaliana EC#: 3.5.1 IUBMB 3.5.99.2 IUBMB
Mutation: M1M, S21A, M75M, M123M, M133M, M216M
Gene Name(s): TENA_E At3g16990 K14A17.22 K14A17_11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HMH
Query on HMH

A, B 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE
C6 H9 N3 O
VUTBELPREDJDDH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.136
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 62.70 α = 90.00
b = 62.70 β = 90.00
c = 287.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2007-06-19

    Type: Initial release

  • Version 1_1: 2007-09-25

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-08-10

    Type: Other