2Q4S

Ensemble refinement of the protein crystal structure of cysteine dioxygenase type I from Mus musculus Mm.241056


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 2Q4S

Classification: OXIDOREDUCTASE

Total Structure Weight: 23276.22

Macromolecule Entities
Molecule Chains Length Organism Details
Cysteine dioxygenase type 1 A 200 Mus musculus EC#: 1.13.11.20 IUBMB
Mutation: M73M, M117M, M179M
Gene Name(s): Cdo1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.159
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.55 α = 90.00
b = 57.55 β = 90.00
c = 122.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2007-09-25
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2011-08-10
    Type: Other