2Q4R

Ensemble refinement of the protein crystal structure of human phosphomannomutase 2 (PMM2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 2Q4R

Classification: ISOMERASE

Total Structure Weight: 28550.90

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphomannomutase 2 A 246 Homo sapiens EC#: 5.4.2.8 IUBMB
Mutation: M28M, M126M, M212M, M227M
Gene Name(s): PMM2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLY
Query on GLY

A GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.207
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 70.62 α = 90.00
b = 70.62 β = 90.00
c = 100.15 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2007-06-19

    Type: Initial release

  • Version 1_1: 2007-09-25

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-08-10

    Type: Other