2Q4O

Ensemble refinement of the crystal structure of a lysine decarboxylase-like protein from Arabidopsis thaliana gene At2g37210


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 2Q4O

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 48049.05

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein At2g37210/T2N18.3 A, B 215 Arabidopsis thaliana EC#: 3.2.2.n1 IUBMB
Mutation: M1M, M8M, M58M, M81M, M99M, M106M, M206M
Gene Name(s): LOG3 At2g37210 T2N18.3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.168
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.40 α = 90.00
b = 66.77 β = 90.00
c = 98.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2007-09-25
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance
  • 2011-08-10
    Type: Other