2PFM

Crystal Structure of Adenylosuccinate Lyase (PurB) from Bacillus anthracis

Structural Biology Knowledgebase: 2PFM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2PFM

Classification: LYASE

Total Structure Weight: 102541.34

Macromolecule Entities
Molecule Chains Length Organism Details
Adenylosuccinate lyase A, B 444 Bacillus anthracis EC#: 4.3.2.2 IUBMB
Gene Name(s): purB GBAA_0290 AB163_03475 AB164_27115 AB165_26245 AB166_09950 AB167_15045 AB168_06520 AB169_13270 AB170_23240 AB171_19465 AB893_01645 ABW01_20885 ADT20_21215 ADT21_09140 BF27_1666

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLI
Query on MLI

A MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.163
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 154.38 α = 90.00
b = 154.38 β = 90.00
c = 174.99 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-05
  • Released Date: 2007-04-17
  • Deposition author(s): Levdikov, V.M., Blagova, E.V., Baumgart, M., Moroz, O.V., Wilkinson, A.J., Wilson, K.S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4