2OD8

Structure of a peptide derived from Cdc9 bound to PCNA

Structural Biology Knowledgebase: 2OD8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.247

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OD8

Classification: PROTEIN BINDING

Total Structure Weight: 31401.17

Macromolecule Entities
Molecule Chains Length Organism Details
Proliferating cell nuclear antigen A 258 Saccharomyces cerevisiae Gene Name(s): POL30 YBR088C YBR0811
DNA ligase I, mitochondrial precursor B 22 Saccharomyces cerevisiae EC#: 6.5.1.1 IUBMB
Fragment: Residues 32-53
Gene Name(s): CDC9 YDL164C


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.247
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 139.28 α = 90.00
b = 139.28 β = 90.00
c = 139.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-21
  • Released Date: 2007-05-01
  • Deposition author(s): Chapados, B.R., Tainer, J.A.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4