2O8O

Crystal structure of Clostridium histolyticum colg collagenase collagen-binding domain 3B at 1.35 Angstrom resolution in presence of calcium

Structural Biology Knowledgebase: 2O8O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.147

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O8O

Classification: HYDROLASE

Total Structure Weight: 27806.37

Macromolecule Entities
Molecule Chains Length Organism Details
Collagenase A, B 122 Hathewaya histolytica EC#: 3.4.24.3 IUBMB
Fragment: COLLAGEN-BINDING DOMAIN, residues 1003-1118
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.147
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 40.87 α = 90.00
b = 59.17 β = 100.77
c = 48.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-12
  • Released Date: 2007-12-11
  • Deposition author(s): Philominathan, S.T.L., Wilson, J.J, Matsushita, O., Sakon, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4