2MNZ

NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2MNZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 7414.15

Macromolecule Entities
Molecule Chains Length Organism Details
Lysine-specific demethylase 5B A 55 Homo sapiens EC#: 1.14.11 IUBMB
Fragment: Zinc finger domain PHD1, residues 306-360
Gene Name(s): KDM5B Gene View JARID1B PLU1 RBBP2H1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H3K4me0 B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-16
  • Released Date: 2014-08-06
  • Deposition author(s): Zhang, Y., Yang, H.R., Guo, X., Rong, N.Y., Song, Y.J., Xu, Y.W., Lan, W.X., Xu, Y.H., Cao, C.

Revision History

No revisions since initial release