2MGY

Solution structure of the mitochondrial translocator protein (TSPO) in complex with its high-affinity ligand PK11195


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 105
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2MGY

Classification: MEMBRANE PROTEIN

Total Structure Weight: 19151.54

Macromolecule Entities
Molecule Chains Length Organism Details
Translocator protein A 169 Mus musculus Gene Name(s): Tspo Bzrp Mbr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Translocator Protein (18 kDA) TSPO

Protein Name: Mitochondrial translocator protein (TSPO) in complex with PK11195


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PKA
Query on PKA

A N-[(2R)-butan-2-yl]-1-(2-chlorophenyl)-N- methylisoquinoline-3-carboxamide
C21 H21 Cl N2 O
RAVIZVQZGXBOQO-CQSZACIVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PKA IC50: 9 nM (94) BindingDB
Ki: 0.7 nM (94) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 105
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-11
  • Released Date: 2014-04-02
  • Deposition author(s): Jaremko, M., Jaremko, L., Giller, K., Becker, S., Zweckstetter, M.

Revision History

  • Version 1_0: 2014-04-02

    Type: Initial release