2LIQ

Solution structure of CCL2 in complex with glycan


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 300
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2LIQ

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 29016.24

Macromolecule Entities
Molecule Chains Length Organism Details
CCL2 lectin A 153 Coprinopsis cinerea Gene Name(s): ccl2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAG
Query on MAG

A BETA-METHYL-N-ACETYL-D-GLUCOSAMINE
C9 H17 N O6
ZEVOCXOZYFLVKN-JGKVKWKGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 300
  • Conformers Submitted: 20
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-30
  • Released Date: 2012-06-06
  • Deposition author(s): Schubert, M., Bleuler-Martinez, S., Walti, M.A., Egloff, P., Aebi, M., Kuenzler, M., Allain, F.H.-T.

Revision History

  • Version 1_0: 2012-06-06

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Database references