2LI8

The solution structure of the Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: Lowest Energy/fewest Violation

Literature

Macromolecules
Sequence Display for 2LI8

Classification: TRANSCRIPTION / RNA

Total Structure Weight: 10448.64


Macromolecule Entities
Molecule Chains Length Organism Details
Protein lin-28 homolog A A 74 Homo sapiens Fragment: CCHC-type 1 and CCHC-type 1 zinc finger domain residues 124-186
Gene Name(s): LIN28A Gene View CSDD1 LIN28 ZCCHC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*GP*GP*AP*GP*AP*U)-3') B 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: lowest energy/fewest violation

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-25
  • Released Date: 2011-12-07
  • Deposition author(s): Allain, F.H.-T., Loughlin, F.E.

Revision History

  • Version 1_0: 2011-12-07

    Type: Initial release

  • Version 1_1: 2012-01-25

    Type: Database references