2LG3

Structure of the duplex containing HNE derived (6S,8R,11S) gamma-HO-PdG when placed opposite dT


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: Back Calculated Data Agree with Experimental Noesy Spectrum

Literature

Macromolecules
Sequence Display for 2LG3

Classification: DNA

Total Structure Weight: 7502.05

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3') A 12 synthetic
DNA (5'-D(*GP*GP*AP*CP*TP*TP*GP*CP*TP*AP*GP*C)-3') B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HND
Query on HND

A (4S)-nonane-1,4-diol
C9 H20 O2
BBKPDHOKNRMWQN-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: back calculated data agree with experimental NOESY spectrum

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-19
  • Released Date: 2012-08-01
  • Deposition author(s): Huang, H., Wang, H., Kozekova, A., Lloyd, R.S., Rizzo, C.J., Stone, M.P.

Revision History

No revisions since initial release