2L8H

Chemical probe bound to HIV TAR RNA

Structural Biology Knowledgebase: 2L8H SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2L8H

Classification: RNA

Total Structure Weight: 9656.04

Macromolecule Entities
Molecule Chains Length Organism Details
HIV TAR RNA A 29 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ARG
Query on ARG

A ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
L8H
Query on L8H

A 4-methoxynaphthalen-2-amine
C11 H11 N O
SFKZPTYRENGBTJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-01-12
  • Released Date: 2011-03-23
  • Deposition author(s): Davidson, A., Begley, D., Lau, C., Varani, G.

Revision History

  • 2011-08-03
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4