NMR Ensemble

2KWG

Solution structure of a fully modified 2'-F/2'-OMe siRNA construct

Structural Biology Knowledgebase: 2KWG SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Lowest Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2KWG

Classification: RNA

Total Structure Weight: 13633.38

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3' A 21 synthetic
5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3' B 21 synthetic

Small Molecules
Modified Residues 8 Unique
ID Chains Type Formula 2D Diagram Parent
GF2
Query on GF2
A, B DNA linking C10 H13 F N5 O7 P DG
OMG
Query on OMG
A, B RNA LINKING C11 H16 N5 O8 P G
OMU
Query on OMU
A, B RNA LINKING C10 H15 N2 O9 P U
AF2
Query on AF2
A, B DNA LINKING C10 H13 F N5 O6 P DA
A2M
Query on A2M
A, B RNA LINKING C11 H16 N5 O7 P A
OMC
Query on OMC
A, B RNA LINKING C10 H16 N3 O8 P C
UFT
Query on UFT
A, B DNA LINKING C9 H12 F N2 O8 P DU
CFZ
Query on CFZ
A, B DNA LINKING C9 H13 F N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-04-09
  • Released Date: 2010-07-21
  • Deposition author(s): Podbevsek, P., Bhat, B., Plavec, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4