Solution structure of a fully modified 2'-F/2'-OMe siRNA construct
DOI:10.2210/pdb2kwg/pdb   NDB ID: 2KWG
2KWG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 13633.38
    Molecule: 5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3'
    Polymer: 1 Type: rna Length: 21
    Chains: A
    Molecule: 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
    Polymer: 2 Type: rna Length: 21
    Chains: B
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GF2
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    GF2 C10 H13 F N5 O7 P DG dnaLinking
    OMG
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    OMG C11 H16 N5 O8 P G rnaLinking
    OMU
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    OMU C10 H15 N2 O9 P U rnaLinking
    AF2
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    AF2 C10 H13 F N5 O6 P DA dnaLinking
    A2M
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    A2M C11 H16 N5 O7 P A rnaLinking
    OMC
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    OMC C10 H16 N3 O8 P C rnaLinking
    UFT
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    UFT C9 H12 F N2 O8 P DU dnaLinking
    CFZ
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    CFZ C9 H13 F N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:2KWG
     
 
Data in orange boxes are gathered from external resources (when available).
Structure Image
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  •   Deposition Summary Hide
    Authors:   Podbevsek, P.,  Bhat, B.,  Plavec, J.

    Deposition:   2010-04-09
    Release:   2010-07-21
    Last Modified (REVDAT):   2011-01-19
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
      NMR Restraints
    NMR Restraint Grid  
    BMRB  
    NMR Ensemble
    Conformers Calculated:     100
    Conformers Submitted:     10
    Selection Criteria: structures with the lowest energy
    NMR Refine
    Method: SOLUTION NMR