2KO0

Solution structure of the THAP zinc finger of THAP1 in complex with its DNA target


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 15
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2KO0

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 20054.53


Macromolecule Entities
Molecule Chains Length Organism Details
THAP domain-containing protein 1 A 87 Homo sapiens Fragment: UNP residues 1-82
Mutation: C62S, C67S
Gene Name(s): THAP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RRM1 B 16 synthetic Specific THAP1 binding sequence element found in the RRM1 gene promoter
ZINC ION C 16 synthetic Specific THAP1 binding sequence element found in the RRM1 gene promoter

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 15
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-08
  • Released Date: 2010-01-19
  • Deposition author(s): Campagne, S., Gervais, V., Saurel, O., Milon, A.

Revision History

  • Version 1_0: 2010-01-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance