2KID

Solution Structure of the S. Aureus Sortase A-substrate Complex

Structural Biology Knowledgebase: 2KID SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: Structures with Acceptable Covalent Geometry

Literature

Macromolecules
Sequence Display for 2KID

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 17348.36

Macromolecule Entities
Molecule Chains Length Organism Details
Sortase A 148 Staphylococcus aureus Fragment: Residues 62-206
Gene Name(s): srtA CH51_13525 EQ80_012735 ER12_012725 ERS092844_02201 ERS093009_01115 ERS195423_01418 ERS365775_01887 ERS410449_00349 ERS411009_01229 ERS411017_00895 ERS445052_00868 RL02_02935
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
(PHQ)LPA(B27) peptide C 5 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000693
Query on PRD_000693
C (PHQ)LPA(B27) PEPTIDE Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: structures with acceptable covalent geometry

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-01
  • Released Date: 2009-07-21
  • Deposition author(s): Suree, N., Liew, C.K., Villareal, V.A., Thieu, W., Fadeev, E.A., Clemens, J.J., Jung, M.E., Clubb, R.T.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry