2KGI

Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2KGI

Classification: METAL BINDING PROTEIN

Total Structure Weight: 7038.64

Macromolecule Entities
Molecule Chains Length Organism Details
Histone demethylase JARID1A A 52 Homo sapiens EC#: 1.14.11 IUBMB
Fragment: PHD-TYPE C-terminal ZINC FINGER
Gene Name(s): KDM5A Gene View JARID1A RBBP2 RBP2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H3(1-9)K4me3 B 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
M3L
Query on M3L
B L-PEPTIDE LINKING C9 H21 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-12
  • Released Date: 2009-05-05
  • Deposition author(s): Song, J., Wang, Z., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance