2KAE

data-driven model of MED1:DNA complex

Structural Biology Knowledgebase: 2KAE SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2KAE

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 20696.13


Macromolecule Entities
Molecule Chains Length Organism Details
GATA-type transcription factor A 71 Caenorhabditis elegans Fragment: UNP residues 111-166
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*DCP*DGP*DGP*DAP*DAP*DAP*DAP*DGP*DTP*DAP*DTP*DAP*DCP*DTP*DTP*DTP*DTP*DCP*DCP*DG)-3' B, C 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-04
  • Released Date: 2009-01-06
  • Deposition author(s): Lowry, J.A., Gamsjaeger, R., Thong, S., Hung, W., Kwan, A.H., Broitman-Maduro, G., Matthews, J.M., Maduro, M., Mackay, J.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4