2K33

Solution structure of an N-glycosylated protein using in vitro glycosylation


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2K33

Classification: MEMBRANE PROTEIN TRANSPORT PROTEIN

Total Structure Weight: 43397.36

Macromolecule Entities
Molecule Chains Length Organism Details
AcrA A 116 Campylobacter jejuni Mutation: K36Q, K50Q
Gene Name(s): cmeA DB00_05080 DB05_00740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B6D
Query on B6D

A 2,4-bis(acetylamino)-2,4,6-trideoxy-beta- D-glucopyranose
2,4-diacetamido-2,4,6-trideoxy-beta-D-glucopyranose, bacillosamine (Synonym)
C10 H18 N2 O5
NRXWTRNYICXMBF-DAJIKZSHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
A2G
Query on A2G

A N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
C8 H15 N O6
OVRNDRQMDRJTHS-CBQIKETKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-18
  • Released Date: 2009-02-03
  • Deposition author(s): Slynko, V., Schubert, M., Numao, S., Kowarik, M., Aebi, M., Allain, F.H.-T.

Revision History

  • 2011-07-13
    Type: Version format compliance