2JSD

Solution structure of MMP20 complexed with NNGH


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: Target Function

Literature

Macromolecules
Sequence Display for 2JSD

Classification: HYDROLASE

Total Structure Weight: 18023.83

Macromolecule Entities
Molecule Chains Length Organism Details
Matrix metalloproteinase-20 A 160 Homo sapiens EC#: 3.4.24 IUBMB
Fragment: catalytic domain, residues 113-272
Gene Name(s): MMP20 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGH
Query on NGH

A N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
C13 H20 N2 O5 S
JIRXORZYIXSWOB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NGH N/A in BindingDB
N/A in BindingMoad
Kd: 17 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-03
  • Released Date: 2007-11-20
  • Deposition author(s): Arendt, Y., Banci, L., Bertini, I., Cantini, F., Cozzi, R., Del Conte, R., Gonnelli, L., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance