2JGP

Structure of the TycC5-6 PCP-C bidomain of the tyrocidine synthetase TycC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 2JGP

Classification: LIGASE

Total Structure Weight: 59295.73

Macromolecule Entities
Molecule Chains Length Organism Details
TYROCIDINE SYNTHETASE 3 A 520 Brevibacillus brevis Fragment: PCP-C BIDOMAIN OF TYCC MODULE 5 AND 6, RESIDUES 5116-5633
Mutation: Q183E
Gene Name(s): tycC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIO
Query on DIO

A 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 84.97 α = 90.00
b = 84.97 β = 90.00
c = 164.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-13
  • Released Date: 2007-10-30
  • Deposition author(s): Samel, S.A., Schoenafinger, G., Knappe, T.A., Marahiel, M.A., Essen, L.-O.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance
  • 2012-06-13
    Type: Other