2J9X

TRYPTOPHAN SYNTHASE IN COMPLEX WITH GP, ALPHA-D,L-GLYCEROL-PHOSPHATE, CS, PH6.5 - ALPHA AMINOACRYLATE FORM - (GP)E(A-A)

Structural Biology Knowledgebase: 2J9X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2J9X

Classification: LYASE

Total Structure Weight: 72610.46

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPTOPHAN SYNTHASE ALPHA CHAIN A 268 Salmonella enterica EC#: 4.2.1.20 IUBMB
Gene Name(s): trpA STM1727
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TRYPTOPHAN SYNTHASE BETA CHAIN B 396 Salmonella enterica EC#: 4.2.1.20 IUBMB
Gene Name(s): trpB STM1726
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P1T
Query on P1T

B 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- 4-YL}METHYL)AMINO]ACRYLIC ACID
C11 H15 N2 O7 P
BXUDKFHCAMQSRX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G3P
Query on G3P

A SN-GLYCEROL-3-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-GSVOUGTGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CS
Query on CS

B CESIUM ION
Cs
NCMHKCKGHRPLCM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

B DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.215
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 183.21 α = 90.00
b = 59.62 β = 94.63
c = 67.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-16
  • Released Date: 2007-06-26
  • Deposition author(s): Ngo, H., Kimmich, N., Harris, R., Niks, D., Blumenstein, L., Kulik, V., Barends, T.R., Schlichting, I., Dunn, M.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4