BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GALACTO-HYDROXIMOLACTAM
2J79
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 108366.07
    Molecule: BETA-GLUCOSIDASE A
    Polymer: 1 Type: protein Length: 468
    Chains: A, B
    EC#: 3.2.1.21   
    Fragment: RESIDUES 2-446
    Organism: Thermotoga maritima
    Gene Name: bglA
    UniProtKB: Protein Feature View | Search PDB | Q08638  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Thermotoga maritima   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1OD0   FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA 
    1OIF   FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA 
    1OIN   FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA 
    1UZ1   FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCO-ISOFAGOMINE LACTAM 
    1W3J   FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH TETRAHYDROOXAZINE 
    2CBU   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH CASTANOSPERMINE 
    2CBV   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH CALYSTEGINE B2 
    2CES   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCOIMIDAZOLE 
    2CET   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH PHENETHYL-SUBSTITUTED GLUCOIMIDAZOLE 
    2J75   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH NOEUROMYCIN 
    2J77   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH DEOXYNOJIRIMYCIN 
    2J78   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCO-HYDROXIMOLACTAM 
    2J7A   CRYSTAL STRUCTURE OF CYTOCHROME C NITRITE REDUCTASE NRFHA COMPLEX FROM DESULFOVIBRIO VULGARIS 
    2J7B   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCO-TETRAZOLE 
    2J7C   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH PHENYL-N-METHYL-GLUCOIMIDAZOLE 
    2J7D   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCOIMIDAZOLE PLUS METHYL ESTER GROUP 
    2J7E   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCOIMIDAZOLE PLUS METHYL PLUS METHYL ESTER GROUP 
    2J7F   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH CARBOXYLATE-SUBSTITUTED GLUCOIMIDAZOLE 
    2J7G   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GLUCOIMIDAZOLE PLUS METHYL PLUS CARBOXYLIC ACID GROUP 
    2J7H   BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH AZAFAGOMINE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
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    ACT C2 H3 O2
    ACETATE ION
    CA
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    CA Ca
    CALCIUM ION
    GTL
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    GTL C6 H12 N2 O5
    (2E,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)- 2-PIPERIDINONE
    GTL:2J79
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    GTL
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    GTL
    N/Ain BindingDB
    Ki: 640 nM - data from BindingMOAD  
    Kd: 1100 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Gloster, T.M.,  Zechel, D.,  Vasella, A.,  Davies, G.J.

    Deposition:   2006-10-06
    Release:   2006-10-18
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.94
    R-Value: 0.189 (obs.)
    R-Free: 0.242
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 94.16 α = 90.00 
    b = 94.44 β = 90.00 
    c = 113.31 γ = 90.00