Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B     DOI:10.2210/pdb2i60/pdb

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Primary Citation       Molecular Description Hide Classification: Virus/viral Protein/immune System Structure Weight: 174944.23   Molecule: EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) Polymer: 1 Type: polypeptide(L) Length: 313 Chains: G, P Fragment: CORE Molecule: ANTIBODY 17B LIGHT CHAIN Polymer: 2 Type: polypeptide(L) Length: 214 Chains: L, Q Fragment: ANTIGEN-BINDING FRAGMENT, FAB Molecule: ANTIBODY 17B HEAVY CHAIN Polymer: 3 Type: polypeptide(L) Length: 229 Chains: H, R Fragment: ANTIGEN-BINDING FRAGMENT, FAB Molecule: [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 Polymer: 4 Type: polypeptide(L) Length: 27 Chains: M, S       Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1 Expression System: Drosophila melanogaster   Polymer: 2 Scientific Name: Homo sapiens Common Name: Human Expression System: Human herpesvirus 4   Polymer: 3 Scientific Name: Homo sapiens Common Name: Human Expression System: Human herpesvirus 4   Polymer: 4 Scientific Name: Synthetic construct         Related PDB Entries Hide Id Details 1YYL  Crystal structure of CD4M33, a scorpion-toxic mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B  1YYM  Crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b  2I5Y  Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links IPA     ISOPROPYL ALCOHOL C3 H8 O Ligand Explorer NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 Ligand Explorer NDG     2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE C8 H15 N O6 Ligand Explorer       Modified Residues Hide Identifier Name Formula Interaction View Links MPT BETA-MERCAPTOPROPIONIC ACID(type: nonPolymer) C3 H6 O2 S Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (12 Domains) CATH Classification v3.2.0 - (2 Domains) PFAM Classification - (6 Domains) GO Terms - (10 Terms)     Reset Layout

Biological Assembly 1     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly 1 assigned by authors Biological assembly 2 assigned by authors         Deposition Summary Hide Authors:   Huang, C.-C.,   Kwong, P.D. Deposition:   2006-08-26 Release:   2006-10-10 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 2.40 R-Value: 0.215 (obs.) R-Free: 0.281 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 51.44 α = 90.00  b = 157.76 β = 93.74  c = 109.85 γ = 90.00