2I19

T. Brucei farnesyl diphosphate synthase complexed with bisphosphonate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 2I19

Classification: TRANSFERASE

Total Structure Weight: 89661.56

Macromolecule Entities
Molecule Chains Length Organism Details
Farnesyl pyrophosphate synthase A, B 390 Trypanosoma brucei EC#: 2.5.1.10 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1BY
Query on 1BY

A, B [2-(PYRIDIN-2-YLAMINO)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)
C7 H12 N2 O6 P2
BHVCADPDEFLLGM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1BY N/A in BindingDB
N/A in BindingMoad
Ki: 16 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.217
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 133.21 α = 90.00
b = 119.55 β = 111.93
c = 62.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-13
  • Released Date: 2006-10-17
  • Deposition author(s): Cao, R., Mao, J., Gao, Y., Robinson, H., Odeh, S., Goddard, A., Oldfield, E.

Revision History

  • Version 1_0: 2006-10-17

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance