2HP1

Inter-subunit signaling in GSAM

Structural Biology Knowledgebase: 2HP1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2HP1

Classification: ISOMERASE

Total Structure Weight: 92862.56

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate-1-semialdehyde 2,1-aminomutase (GSAM) plp-form A, B 432 Synechococcus elongatus EC#: 5.4.3.8 IUBMB
Mutation: I1108N, L1133I, D1172S, S1179K, A1187T, A1327G
Gene Name(s): hemL gsa syc0881_c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EA5
Query on EA5

A (4S)-4-AMINO-5-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- 4-YL}METHYL)AMINO]PENTANOIC ACID
C13 H22 N3 O7 P
DSCJVPXIMLLBAH-JTQLQIEISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HOZ
Query on HOZ

B (4S)-4,5-DIAMINOPENTANOIC ACID
C5 H12 N2 O2
PQGAAJQIFBEYSA-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.48 α = 90.00
b = 106.98 β = 90.00
c = 119.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-17
  • Released Date: 2006-08-22
  • Deposition author(s): Stetefeld, J.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4