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An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNA
DOI:10.2210/pdb2gm4/pdb   NDB ID: PD0797
2GM4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Recombination , DNA
    Structure Weight: 74389.50
    Molecule: 5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3'
    Polymer: 1 Type: dna Length: 21
    Chains: I, J, X, Z
    Molecule: 5'-D(*TP*TP*AP*TP*CP*GP*GP*AP*CP*AP*CP*TP*G)-3'
    Polymer: 2 Type: dna Length: 13
    Chains: K, Y
    Molecule: Transposon gamma-delta resolvase
    Polymer: 3 Type: protein Length: 183
    Chains: A, B
    Mutation: R2A, E56K, G96S, S98D, D100S, G101S, E102A, K105R, E124Q
    Organism Escherichia coli
    Gene Names tnpR ECOK12F009
    UniProtKB:   Protein Feature View | Search PDB | P03012  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1GDT  Crystal structure of a site-specific recombinase, gamma-delta resolvase complexed with a 34 BP cleavage site 
    1ZR2  Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs 
    1ZR4  Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs 
    2GM5  An activated, truncated gamma-delta resolvase tetramer 
    2RSL  Refinement of gamma delta resolvase reveals a strikingly flexible molecule 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0797
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Kamtekar, S.,  Ho, R.S.,  Li, W.,  Steitz, T.A.

    Deposition:   2006-04-05
    Release:   2006-06-27
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.50
    R-Value: 0.282 (obs.)
    R-Free: 0.323
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 110.14 α = 90.00 
    b = 137.69 β = 90.00 
    c = 83.47 γ = 90.00