2FV9

Crystal structure of TACE in complex with JMV 390-1

  • Classification: HYDROLASE
  • Deposited: 2006-01-30 Released: 2006-03-14
  • Deposition author(s): Orth, P.
  • Organism: Homo sapiens
  • Expression System: Trichoplusia ni
  • Mutation(s): 3

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 2FV9

Classification: HYDROLASE

Total Structure Weight: 59243.07

Macromolecule Entities
Molecule Chains Length Organism Details
ADAM 17 A, B 258 Homo sapiens EC#: 3.4.24.86 IUBMB
Mutation: S266A, V353G, N452Q
Gene Name(s): ADAM17 Gene View CSVP TACE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
002
Query on 002

B N-[(2R)-2-BENZYL-4-(HYDROXYAMINO)-4-OXOBUTANOYL]- L-ISOLEUCYL-L-LEUCINE
C23 H35 N3 O6
MWZOULASPWUGJJ-NFBUACBFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
INN
Query on INN

A N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4- methylpentanoyl}-3-methyl-L-valyl-N-(2-aminoethyl)- L-alaninamide
C19 H37 N5 O5
LMIQCBIEAHJAMZ-GZBFAFLISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
002 N/A in BindingDB
IC50: 60 nM  BindingMOAD
N/A in PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000919
Query on PRD_000919
A 3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE Peptide-like /
Enzyme inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.251
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.80 α = 90.00
b = 76.22 β = 90.00
c = 102.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-30
  • Released Date: 2006-03-14
  • Deposition author(s): Orth, P.

Revision History

  • Version 1_0: 2006-03-14

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_3: 2013-02-27

    Type: Other

  • Version 1_4: 2017-02-01

    Type: Structure summary

  • Version 1_5: 2017-10-18

    Type: Refinement description