2FV5

Crystal structure of TACE in complex with IK682


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 2FV5

Classification: HYDROLASE

Total Structure Weight: 59759.49

Macromolecule Entities
Molecule Chains Length Organism Details
ADAM 17 A, B 261 Homo sapiens EC#: 3.4.24.86 IUBMB
Mutation: S266A, V353G, N452Q
Gene Name(s): ADAM17 Gene View CSVP TACE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
541
Query on 541

A, B (2R)-N-HYDROXY-2-[(3S)-3-METHYL-3-{4-[(2- METHYLQUINOLIN-4-YL)METHOXY]PHENYL}-2-OXOPYRROLIDIN- 1-YL]PROPANAMIDE
C25 H27 N3 O4
YDMIPBHQKFOFQW-NSYGIPOTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
541 IC50: 0.56 - 350 nM (97 - 98) BindingDB
Ki: 0.06 - 0.56 nM (97 - 99) BindingDB

Ki: 0.03 nM  BindingMOAD
Kd: <0.002 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.218
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.61 α = 90.00
b = 75.70 β = 90.00
c = 103.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-30
  • Released Date: 2006-07-04
  • Deposition author(s): Orth, P., Niu, X.

Revision History

  • Version 1_0: 2006-07-04

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description