2FJM

The structure of phosphotyrosine phosphatase 1B in complex with compound 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 2FJM

Classification: HYDROLASE

Total Structure Weight: 73750.60

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase, non-receptor type 1 A, B 310 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: CATALYTIC DOMAIN (residues 1-298)
Mutation: L619V
Gene Name(s): PTPN1 Gene View PTP1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
073
Query on 073

A, B (4-{(2S,4E)-2-(1H-1,2,3-BENZOTRIAZOL-1-YL)- 2-[4-(METHOXYCARBONYL)PHENYL]-5-PHENYLPENT- 4-ENYL}PHENYL)(DIFLUORO)METHYLPHOSPHONIC ACID
C32 H28 F2 N3 O5 P
GWWTUJWRRCTCSI-AOCUTKQBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
073 IC50: 29 - 142 nM (98 - 100) BindingDB

IC50: 142 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 86.43 α = 90.00
b = 86.62 β = 90.00
c = 139.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-03
  • Released Date: 2006-01-17
  • Deposition author(s): Asante-Appiah, E., Patel, S., Desponts, C., Taylor, J.M., Lau, C., Dufresne, C., Therien, M., Friesen, R., Becker, J.W., Leblanc, Y., Scapin, G.

Revision History

  • Version 1_0: 2006-01-17

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description