Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state DOI:10.2210/pdb2eik/pdb

2EIK   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Oxidoreductase Structure Weight: 443434.25 Molecule: Cytochrome c oxidase subunit 1 Polymer: 1 Type: protein Length: 514 Chains: A, N EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO1 COI COXI MTCO1 UniProtKB:   Protein Feature View | Search PDB | P00396     Molecule: Cytochrome c oxidase subunit 2 Polymer: 2 Type: protein Length: 227 Chains: B, O EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO2 COII COXII MTCO2 UniProtKB:   Protein Feature View | Search PDB | P68530     Molecule: Cytochrome c oxidase subunit 3 Polymer: 3 Type: protein Length: 261 Chains: C, P EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO3 COIII COXIII MTCO3 UniProtKB:   Protein Feature View | Search PDB | P00415     Molecule: Cytochrome c oxidase subunit 4 isoform 1 Polymer: 4 Type: protein Length: 147 Chains: D, Q EC#: 1.9.3.1    Organism Bos taurus Gene Names COX4I1 COX4 UniProtKB:   Protein Feature View | Search PDB | P00423     Molecule: Cytochrome c oxidase polypeptide Va Polymer: 5 Type: protein Length: 109 Chains: E, R EC#: 1.9.3.1    Organism Bos taurus Gene Name COX5A UniProtKB:   Protein Feature View | Search PDB | P00426     Molecule: Cytochrome c oxidase polypeptide Vb Polymer: 6 Type: protein Length: 98 Chains: F, S EC#: 1.9.3.1    Organism Bos taurus Gene Name COX5B UniProtKB:   Protein Feature View | Search PDB | P00428     Molecule: Cytochrome c oxidase polypeptide VIa-heart Polymer: 7 Type: protein Length: 85 Chains: G, T EC#: 1.9.3.1    Organism Bos taurus Gene Names COX6A2 COX6A UniProtKB:   Protein Feature View | Search PDB | P07471     Molecule: Cytochrome c oxidase subunit VIb isoform 1 Polymer: 8 Type: protein Length: 85 Chains: H, U EC#: 1.9.3.1    Organism Bos taurus Gene Names COX6B1 COX6B UniProtKB:   Protein Feature View | Search PDB | P00429     Molecule: Cytochrome c oxidase polypeptide VIc Polymer: 9 Type: protein Length: 73 Chains: I, V EC#: 1.9.3.1    Organism Bos taurus Gene Name COX6C UniProtKB:   Protein Feature View | Search PDB | P04038     Molecule: Cytochrome c oxidase polypeptide VIIa-heart Polymer: 10 Type: protein Length: 59 Chains: J, W EC#: 1.9.3.1    Organism Bos taurus Gene Names COX7A1 COX7A COX7AH UniProtKB:   Protein Feature View | Search PDB | P07470     Molecule: Cytochrome c oxidase polypeptide VIIb Polymer: 11 Type: protein Length: 56 Chains: K, X EC#: 1.9.3.1    Organism Bos taurus Gene Name COX7B UniProtKB:   Protein Feature View | Search PDB | P13183     Molecule: Cytochrome c oxidase polypeptide VIIc Polymer: 12 Type: protein Length: 47 Chains: L, Y EC#: 1.9.3.1    Organism Bos taurus Gene Names COX7C COX7CP1 UniProtKB:   Protein Feature View | Search PDB | P00430     Molecule: Cytochrome c oxidase polypeptide VIII-heart Polymer: 13 Type: protein Length: 46 Chains: M, Z EC#: 1.9.3.1    Organism Bos taurus Gene Names COX8B COX8H UniProtKB:   Protein Feature View | Search PDB | P10175         Source Hide Polymer: 1 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 2 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 3 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 4 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 5 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 6 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 7 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 8 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 9 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 10 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 11 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 12 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 13 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle       Related PDB Entries Hide Identifier Details 1OCC    1OCO    1OCR    1OCZ    1V54    1V55    2DYR    2DYS    2eij    2eil    2eim    2ein    2OCC        Ligand Chemical Component Hide Identifier Formula Name Interactions CD Search  Download  Cd CADMIUM ION   Ligand Explorer CDL Search  Download  C81 H156 O17 P2 CARDIOLIPIN   Ligand Explorer CHD Search  Download  C24 H40 O5 CHOLIC ACID   Ligand Explorer CU Search  Download  Cu COPPER (II) ION   Ligand Explorer CUA Search  Download  Cu2 DINUCLEAR COPPER ION   Ligand Explorer DMU Search  Download  C22 H42 O11 DECYL-BETA-D-MALTOPYRANOSIDE   Ligand Explorer HEA Search  Download  C49 H56 Fe N4 O6 HEME-A   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer PEK Search  Download  C43 H78 N O8 P (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}- 1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)- ICOSA-5,8,11,14-TETRAENOATE   Ligand Explorer PGV Search  Download  C40 H77 O10 P (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}- 1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC- 11-ENOATE   Ligand Explorer PSC Search  Download  C42 H81 N O8 P (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9- OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA- 4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4- OXIDE   Ligand Explorer TGL Search  Download  C57 H110 O6 TRISTEAROYLGLYCEROL   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type FME Search  C6 H11 N O3 S MET lPeptideLinking TPO Search  C4 H10 N O6 P THR lPeptideLinking SAC Search  C5 H9 N O4 SER lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 28 Domains - data from SCOP   CATH Classification v3.4.0: 30 Domains - data from CATH   Pfam Classification: 14 Domains - data from Pfam   GO Terms: 90 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA,PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Muramoto, K.,  Hirata, K.,  Shinzawa-Itoh, K.,  Yoko-O, S.,  Yamashita, E.,  Aoyama, H.,  Tsukihara, T.,  Yoshikawa, S. Deposition:   2007-03-13 Release:   2007-05-29 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Biological assembly     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.10 R-Value: 0.199 (work) R-Free: 0.228 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 183.32 α = 90.00  b = 206.52 β = 90.00  c = 178.16 γ = 90.00      Molecule of the Month Hide Cytochrome c Cytochrome c Oxidase