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Ara7-GDP/AtVps9a(D185N)
2EFH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transport Protein
    Structure Weight: 100996.61
    Molecule: Similarity to vacuolar protein sorting-associated protein VPS9
    Polymer: 1 Type: protein Length: 267
    Chains: A, C
    Fragment: Vps9 domain
    Mutation: D185N
    Organism Arabidopsis thaliana
    Gene Names VPS9A VPS9 At3g19770 MMB12.26
    UniProtKB:   Protein Feature View | Search PDB | Q9LT31  
    Molecule: Small GTP-binding protein-like
    Polymer: 2 Type: protein Length: 181
    Chains: B, D
    Fragment: GTPase domain
    Organism Arabidopsis thaliana
    Gene Names RABF2B ARA-7 RAB5B At4g19640 F24J7.190
    UniProtKB:   Protein Feature View | Search PDB | Q9SN68  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Arabidopsis thaliana   Taxonomy   Common Name: Thale cress Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Arabidopsis thaliana   Taxonomy   Common Name: Thale cress Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2efd   
    2efe   
    2fec   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GDP
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    GDP C10 H15 N5 O11 P2
    GUANOSINE-5'-DIPHOSPHATE
    GDP:2EFH
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Ihara, K.,  Uejima, T.,  Wakatsuki, S.

    Deposition:   2007-02-22
    Release:   2008-02-26
    Last Modified (REVDAT):   2011-12-21
     
  •   Revision History    Hide
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    2011-12-21
    Citation
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.216 (obs.)
    R-Free: 0.259
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 58.47 α = 81.90 
    b = 58.61 β = 87.42 
    c = 68.97 γ = 72.75