2EFH

Ara7-GDP/AtVps9a(D185N)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 2EFH

Classification: TRANSPORT PROTEIN

Total Structure Weight: 100995.93

Macromolecule Entities
Molecule Chains Length Organism Details
Similarity to vacuolar protein sorting-associated protein VPS9 A, C 267 Arabidopsis thaliana Fragment: Vps9 domain
Mutation: D185N
Gene Name(s): VPS9A VPS9 At3g19770 MMB12.26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small GTP-binding protein-like B, D 181 Arabidopsis thaliana Fragment: GTPase domain
Gene Name(s): RABF2B ARA-7 RAB5B Gene View At4g19640 F24J7.190
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

B, D GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.214
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 58.47 α = 81.90
b = 58.61 β = 87.42
c = 68.97 γ = 72.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-22
  • Released Date: 2008-02-26
  • Deposition author(s): Ihara, K., Uejima, T., Wakatsuki, S.

Revision History

  • Version 1_0: 2008-02-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-12-21

    Type: Database references