2E40

Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium in complex with gluconolactone

Structural Biology Knowledgebase: 2E40 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2E40

Classification: HYDROLASE

Total Structure Weight: 106275.57

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-glucosidase A, B 465 Phanerochaete chrysosporium EC#: 3.2.1.21 IUBMB
Gene Name(s): BGL1A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LGC
Query on LGC

A, B (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO- 2H-PYRAN-2-ONE
GLUCONOLACTONE (Synonym)
C6 H10 O6
PHOQVHQSTUBQQK-SQOUGZDYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.79 α = 90.00
b = 120.08 β = 90.00
c = 133.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-01
  • Released Date: 2007-03-27
  • Deposition author(s): Nijikken, Y., Tsukada, T., Igarashi, K., Samejima, M., Fushinobu, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4