2E3R

Crystal structure of CERT START domain in complex with C18-ceramide (P1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 2E3R

Classification: LIPID TRANSPORT

Total Structure Weight: 58995.44

Macromolecule Entities
Molecule Chains Length Organism Details
Lipid-transfer protein CERT A, B 255 Homo sapiens Fragment: CERT START DOMAIN (RESIDUES 347-598)
Gene Name(s): COL4A3BP Gene View CERT STARD11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
18C
Query on 18C

A, B N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2- YL)STEARAMIDE
3R,, (2S (Synonym)
C36 H71 N O3
VODZWWMEJITOND-NXCSZAMKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.192
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 46.46 α = 77.54
b = 50.13 β = 70.96
c = 62.65 γ = 81.85

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-28
  • Released Date: 2007-12-18
  • Deposition author(s): Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.

Revision History

  • Version 1_0: 2007-12-18

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance