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Crystal structure of Escherichia coli GadB in complex with bromide
2DGL
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 320131.87
    Molecule: Glutamate decarboxylase beta
    Polymer: 1 Type: protein Length: 466
    Chains: A, B, C, D, E, F
    EC#: 4.1.1.15   
    Organism Escherichia coli
    Gene Names gadB b1493 JW1488
    UniProtKB:   Protein Feature View | Search PDB | P69910  
     
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    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
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    Identifier Details
    1PMM  Crystal structure of Escherichia coli GadB (low pH) 
    1PMO  Crystal structure of Escherichia coli GadB (neutral pH) 
    2DGK  N-terminal deletion mutant of the same protein in an autoinhibited state (aldamine) 
    2DGM  the same protein in complex with iodide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    ACY
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    Download      		ACY C2 H4 O2
    ACETIC ACID
    BR
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    Download      		BR Br
    BROMIDE ION
    PLP
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    Download      		PLP C8 H10 N O6 P
    PYRIDOXAL-5'-PHOSPHATE
    		PLP:2DGL
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Gruetter, M.G.,  Capitani, G.,  Gut, H.

    Deposition:   2006-03-14
    Release:   2006-06-20
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.15
    R-Value: 0.218 (work)
    R-Free: 0.248
    Space Group: P 63 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 297.05 α = 90.00 
    b = 297.05 β = 90.00 
    c = 233.73 γ = 120.00