2D3O

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Structural Biology Knowledgebase: 2D3O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.322
  • R-Value Work: 0.299

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D3O

Classification: Ribosome

Total Structure Weight: 976597.25


Macromolecule Entities
Molecule Chains Length Organism Details
50S RIBOSOMAL PROTEIN L23 R 95 Deinococcus radiodurans Gene Name(s): rplW DR_0313
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S RIBOSOMAL PROTEIN L24 S 115 Deinococcus radiodurans Gene Name(s): rplX DR_0322
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S RIBOSOMAL PROTEIN L29 W 67 Deinococcus radiodurans Gene Name(s): rpmC DR_0319
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Trigger Factor 1 112 Deinococcus radiodurans EC#: 5.2.1.8 IUBMB
Fragment: Ribosome Binding domain
Gene Name(s): tig DR_1948
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S RIBOSOMAL RNA 0 2880 Deinococcus radiodurans


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.322
  • R-Value Work: 0.299
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.50 α = 90.00
b = 410.50 β = 90.00
c = 695.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-30
  • Released Date: 2005-12-06
  • Deposition author(s): Schluenzen, F., Wilson, D.N., Hansen, H.A., Tian, P., Harms, J.M., McInnes, S.J., Albrecht, R., Buerger, J., Wilbanks, S.M., Fucini, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4