2CVI

Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii

PDB DOI: https://doi.org/10.2210/pdb2CVI/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Pyrococcus horikoshii OT3
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2005-06-03 Released: 2006-06-03
Deposition Author(s): Kitago, Y., Sakai, N., Matsumoto, D., Yao, M., Aizawa, T., Demura, M., Kawano, K., Nitta, K., Watanabe, N., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.231
R-Value Work: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii

Kitago, Y., Sakai, N., Matsumoto, D., Yao, M., Aizawa, T., Demura, M., Kawano, K., Nitta, K., Watanabe, N., Tanaka, I.

To be published.

Macromolecule Content

Total Structure Weight: 19.56 kDa
Atom Count: 1,526
Modelled Residue Count: 166
Deposited Residue Count: 166
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
75aa long hypothetical regulatory protein AsnC	A, B	83	Pyrococcus horikoshii OT3	Mutation(s): 0
UniProt
Find proteins for O73983 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O73983 Go to UniProtKB: O73983
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O73983
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain E [auth B] MOL2 format, chain E [auth B]	E [auth B]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]
K Query on K Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.231
R-Value Work: 0.203
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.972	α = 90
b = 61.972	β = 90
c = 75.797	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
SCALEPACK	data scaling
OASIS	model building
CNS	refinement
OASIS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-06-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-06-03
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references, Derived calculations

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Help and Resources

2CVI

Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii

Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)