2BPY

HIV-1 protease-inhibitor complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.197

Literature

Macromolecules
Sequence Display for 2BPY

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 22334.85

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Details: COMPLEXED WITH L-739,622
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3IN
Query on 3IN

B N-[2(S)-CYCLOPENTYL-1(R)-HYDROXY-3(R)METHYL]- 5-[(2(S)-TERTIARY-BUTYLAMINO-CARBONYL)-4- (N1-(2)-(N-METHYLPIPERAZINYL)-3-CHLORO-PYRAZINYL- 5-CARBONYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)- PHENYLMETHYL-PENTANAMIDE
C37 H55 Cl N8 O5
SQZXWXXIPWXBCL-CYTJBAGBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3IN N/A in BindingDB
Ki: 39.8 nM  BindingMOAD
Ki: 39.8 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.197
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.64 α = 90.00
b = 87.28 β = 90.00
c = 46.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-01-22
  • Released Date: 1999-02-23
  • Deposition author(s): Munshi, S., Chen, Z.

Revision History

  • Version 1_0: 1999-02-23

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2012-05-09

    Type: Structure summary